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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153521319_153522109_F

Intron Information:

Intron Rank:
146980
Intron Class:
major
Intron Phase:
Intron Coordinates:
153521319 - 153522109
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTCTCTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
66.6
0.6
1.7
80.14
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029157
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033035
153512737 - 153522167
9431