About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153809212_153809633_R

Intron Information:

Intron Rank:
144405
Intron Class:
major
Intron Phase:
Intron Coordinates:
153809212 - 153809633
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.4
0.64
0.9
73.2
36.8
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024973
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022304
153808330 - 153810224
1895