Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153830135_153833232_F

Intron Information:

Intron Rank:

145175

Intron Class:

major

Intron Phase:

Intron Coordinates:

153830135 - 153833232

Intron Length:

3098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGCTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

TTCCCCTTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.6

32.8

Major BPS

0.5

1.1

76.9

32.8

Major PPT

68.7

0.42

1.1

61.5

44.6

Minor 5ss

31.6

-2.1

3.1

31.7

42.6

Minor BPS

76.2

0.9

1.4

87.06

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043724

153829955 - 153837419

7465