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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15398611_15411903_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15398611 - 15411903
Intron Length:
13293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TTTATTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTATTTTATT
Flanking Amino Acid:
IMQNPLTFSADKHKSTSDIL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.7
0.83
0.8
81.1
35.1
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
57.8
0.32
1.8
77.77
39

Associated Gene:

Gene:
ZNF438
Ensembl Gene ID:
ENSAPLG00000007479
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020047
15371312 - 15416440
45129