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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15407388_15411903_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15407388 - 15411903
Intron Length:
4516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAGT
5'SS Class:
major
3'SS Sequence:
TTTATTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTATTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76.3
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.7
0.83
0.8
81.1
35.1
Minor 5ss
43.6
-0.7
2.6
60.7
43.6
Minor BPS
57.8
0.32
1.8
77.77
39

Associated Gene:

Gene:
ZNF438
Ensembl Gene ID:
ENSAPLG00000007479
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007753
15407282 - 15416107
8826