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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154263532_154303504_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
154263532 - 154303504
Intron Length:
39973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
TCCTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCAATTGCAATT
Flanking Amino Acid:
SNDTQELQDGLHATQQETNK
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
65.6
40.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.1
0.72
0.7
76.6
25.4
Minor 5ss
36.2
-1.6
3.1
54.6
42.6
Minor BPS
42
-0.5
2
56.62
40.7

Associated Gene:

Gene:
TSNARE1
Ensembl Gene ID:
ENSAPLG00000005699
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037372
154091481 - 154443779
352299
ENSAPLT00000005894
154175965 - 154374896
198932