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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15437214_15445223_R

Intron Information:

Intron Rank:
153612
Intron Class:
major
Intron Phase:
Intron Coordinates:
15437214 - 15445223
Intron Length:
8010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
TATTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTTTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.2
44.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85
0.79
0.7
80.5
31.3
Minor 5ss
32.3
-2
3
39.3
46
Minor BPS
50
-0
1.9
68.03
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030123
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037985
15436751 - 15446195
9445