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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154577554_154578527_R

Intron Information:

Intron Rank:
133803
Intron Class:
major
Intron Phase:
Intron Coordinates:
154577554 - 154578527
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019229
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028354
154574463 - 154578760
4298