About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154607583_154608154_R

Intron Information:

Intron Rank:
134432
Intron Class:
major
Intron Phase:
Intron Coordinates:
154607583 - 154608154
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAATATAT
5'SS Class:
major
3'SS Sequence:
CTGCCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.1
65.3
34.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.9
0.65
0.8
72.7
32
Minor 5ss
42.2
-0.9
3.2
62.4
43.3
Minor BPS
65.6
0.57
1.6
82.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032206
154607314 - 154608291
978