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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154684461_154687071_F

Intron Information:

Intron Rank:
145496
Intron Class:
major
Intron Phase:
Intron Coordinates:
154684461 - 154687071
Intron Length:
2611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATCATACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCCCATCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
64.4
0.32
1
57
43.1
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
48.5
-0
1.9
66.85
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034643
154683681 - 154687541
3861