Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154708968_154746144_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

154708968 - 154746144

Intron Length:

37177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GGATTTCGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGGAT

U12 Branch Point Sequence:

CTTTTCTGGATT

Flanking Amino Acid:

PKDSSGVEFMGGWNSWSAWG

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.4

38.7

Major BPS

58.9

0.22

1.5

59.3

47.1

Major PPT

0.29

1.1

54.3

45.6

Minor 5ss

26.1

-2.7

2.9

22.8

37.4

Minor BPS

63.4

0.5

1.5

78.87

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028784

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039356

154708047 - 154746386

38340