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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154708968_154754458_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
154708968 - 154754458
Intron Length:
45491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TACCTTGCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACATGACC
Flanking Amino Acid:
PKDSSGVEFMANGRYNSRSQ
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
66.4
0.37
0.9
60.9
34.9
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
59
0.26
1.8
74.61
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028784
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047885
154708220 - 154755577
47358