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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15471531_15472355_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15471531 - 15472355
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATCTT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGATCCTGAACT
Flanking Amino Acid:
REDIAEITEMDADVSNQIIL
Intron Amino Acid Position:
2092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
76.9
38.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
39.6
-1.2
3.2
55.6
43
Minor BPS
76.5
0.91
1.4
87.33
37.3

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531