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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15478195_15478847_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15478195 - 15478847
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TTGGGCTCACTG
Flanking Amino Acid:
GRTAANKIKEQCPLEAGLHS
Intron Amino Acid Position:
1906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
80.3
0.68
0.8
76.5
32.1
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
40.7
-0.8
2.2
46.61
46.9

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531