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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15481351_15483215_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15481351 - 15483215
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
CTTTCTTCAGCA
Flanking Amino Acid:
VKWKYMVSTTVGSRQKGEQQ
Intron Amino Acid Position:
1751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
57.7
0.24
1.8
71.35
41.2

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531