Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1548191 - 1550404

Intron Length:

2214

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

ACGCATTTCACT

Flanking Amino Acid:

DIYSKKTLAKSKGASAGREW

Intron Amino Acid Position:

652

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.7

82.7

36.5

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

84.6

0.78

0.7

81.1

30.9

Minor 5ss

27.5

-2.6

3.9

40.4

45.7

Minor BPS

46.2

-0.2

1.9

60.28

43.4

Associated Gene:

Gene:

SMARCC1

Ensembl Gene ID:

ENSAPLG00000014937

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025065

1510299 - 1709755

199457

ENSAPLT00000038362

1510299 - 1709755

199457

ENSAPLT00000017626

1510299 - 1709755

199457

ENSAPLT00000038184

1510299 - 1709755

199457

ENSAPLT00000017188

1510299 - 1709755

199457

ENSAPLT00000035479

1510299 - 1709755

199457

ENSAPLT00000046273

1510299 - 1709755

199457

ENSAPLT00000015679

1510299 - 1709755

199457

ENSAPLT00000030423

1510299 - 1709755

199457

ENSAPLT00000045670

1510299 - 1709755

199457

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1548191_1550404_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: