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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154829249_154836402_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
154829249 - 154836402
Intron Length:
7154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
TCTTCTCTTCCT
Flanking Amino Acid:
LLIIIYVSVWRYIRSERSVI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
39.3
-0.7
3.7
72.35
44.7

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046622
154823141 - 154879625
56485