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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15483493_15483840_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15483493 - 15483840
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCATTTA
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TGTTTTCTCACA
Flanking Amino Acid:
KNSSESLHQKEESRSETKPY
Intron Amino Acid Position:
1659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
73.7
33.1
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
85.1
0.79
0.8
80.1
32
Minor 5ss
36.6
-1.5
3.2
49.1
47.1
Minor BPS
49.1
-0
2
68.01
38.6

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531