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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154836506_154840592_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
154836506 - 154840592
Intron Length:
4087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCCTCTCACG
Flanking Amino Acid:
LIGQTQTRNKVICTLVAAFL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
72.7
0.56
1
75
30.1
Major PPT
81.1
0.7
0.7
72.7
32.1
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
46.7
-0.4
2.1
57.09
44.5

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046622
154823141 - 154879625
56485
ENSAPLT00000043980
154786908 - 154892711
105804
ENSAPLT00000024293
154787972 - 154892711
104740
ENSAPLT00000009922
154786908 - 154891523
104616