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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154840744_154844486_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
154840744 - 154844486
Intron Length:
3743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGATC
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTCATGT
Flanking Amino Acid:
IRKRFLCLGWGLPALVVAIS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73
38.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.6
85.4
22
Minor 5ss
30.9
-2.2
3.2
34.7
41.5
Minor BPS
49.4
0.03
2.1
74.07
42.9

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043980
154786908 - 154892711
105804
ENSAPLT00000024293
154787972 - 154892711
104740
ENSAPLT00000009922
154786908 - 154891523
104616
ENSAPLT00000046622
154823141 - 154879625
56485