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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154844557_154850596_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
154844557 - 154850596
Intron Length:
6040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTAAC
U12 Branch Point Sequence:
CACTGGGTAACT
Flanking Amino Acid:
TKAKGYGTANYCWLSLEGGL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
46.7
-0.2
1.4
47.1
44.6
Major PPT
87.7
0.85
0.7
80.1
31.9
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
40.2
-0.6
2.8
60.03
49.3

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024293
154787972 - 154892711
104740
ENSAPLT00000009922
154786908 - 154891523
104616
ENSAPLT00000046622
154823141 - 154879625
56485
ENSAPLT00000043980
154786908 - 154892711
105804