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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154850664_154854880_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
154850664 - 154854880
Intron Length:
4217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTTCTTTCAACA
Flanking Amino Acid:
FVGPAAAVVLVNMVIGILVF
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
63.4
40.8
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
84.2
0.77
0.8
81.3
29.2
Minor 5ss
42.6
-0.8
3.1
54.6
44.9
Minor BPS
65.3
0.48
1.5
76.67
34

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046622
154823141 - 154879625
56485
ENSAPLT00000043980
154786908 - 154892711
105804
ENSAPLT00000024293
154787972 - 154892711
104740
ENSAPLT00000009922
154786908 - 154891523
104616