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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15486313_15487050_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15486313 - 15487050
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
YKKLMLLQIKGRRHVQTRLV
Intron Amino Acid Position:
1408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.7
0.69
0.8
78.8
34.8
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531