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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154868056_154869889_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
154868056 - 154869889
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTGCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGGTTCTGACTT
Flanking Amino Acid:
VMVHCILRREVQDAVKCRVV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
70.1
42
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.6
0.76
0.8
77.8
31
Minor 5ss
35.1
-1.7
2.7
41.2
44.7
Minor BPS
51
0.11
1.7
68.84
42.5

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043980
154786908 - 154892711
105804
ENSAPLT00000024293
154787972 - 154892711
104740
ENSAPLT00000009922
154786908 - 154891523
104616
ENSAPLT00000046622
154823141 - 154879625
56485