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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154876764_154877722_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
154876764 - 154877722
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAATC
Flanking Amino Acid:
VSTLSMSSLERRKSRYAELD
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.4
0.5
0.9
62.9
43
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
63.1
0.39
1.4
70.08
36

Associated Gene:

Gene:
ADGRB1
Ensembl Gene ID:
ENSAPLG00000009536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043980
154786908 - 154892711
105804
ENSAPLT00000024293
154787972 - 154892711
104740
ENSAPLT00000009922
154786908 - 154891523
104616
ENSAPLT00000046622
154823141 - 154879625
56485