About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15489078_15490100_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15489078 - 15490100
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTTATTTAATG
Flanking Amino Acid:
ESFLGRLNNKVAGMPETVLT
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
80.7
33.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.5
0.89
0.6
85
22.6
Minor 5ss
31.4
-2.1
2.4
35.4
40.5
Minor BPS
61.5
0.22
1.5
63.48
38.6

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531