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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154917450_154918703_R

Intron Information:

Intron Rank:
152580
Intron Class:
major
Intron Phase:
Intron Coordinates:
154917450 - 154918703
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AAAAACTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
81
31.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
38.8
-1.3
3.7
60.9
43.8
Minor BPS
49.8
0.07
1.8
67.02
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022690
154917192 - 154919163
1972