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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15493118_15502286_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15493118 - 15502286
Intron Length:
9169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTAAAAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCCCCTTAAAA
Flanking Amino Acid:
MQEVEQLLKKRLADNQESQM
Intron Amino Acid Position:
1131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.7
0.22
1.1
57.1
41.2
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
67.3
0.54
1.5
70.09
41.9

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531