Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154998364_154998500_R

Intron Information:

Intron Rank:

133043

Intron Class:

major

Intron Phase:

Intron Coordinates:

154998364 - 154998500

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTGAGTTAT

5'SS Class:

major

3'SS Sequence:

TCTCCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAG

U12 Branch Point Sequence:

TTCTTGTCAGCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.3

37.5

Major BPS

60.9

0.27

1.7

71.4

45.1

Major PPT

87.6

0.85

0.7

31.9

Minor 5ss

37.4

-1.4

2.9

44.6

43.6

Minor BPS

44.8

-0.4

2.3

61.77

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018815

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035595

154981836 - 154998529

16694