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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_154998765_155028779_R

Intron Information:

Intron Rank:
141065
Intron Class:
major
Intron Phase:
Intron Coordinates:
154998765 - 155028779
Intron Length:
30015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGGCAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
47.3
-0.1
1.4
55.1
42.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
35.1
-1.7
3.5
50.3
46.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023219
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040423
154998550 - 155029170
30621
ENSAPLT00000024950
154998550 - 155029170
30621