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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15502417_15508006_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15502417 - 15508006
Intron Length:
5590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
AATGTTTAAAGA
Flanking Amino Acid:
SSSKTMSIKERLALLKKSGE
Intron Amino Acid Position:
1087

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
44.8
-0.3
1.9
53.45
39.6

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531