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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155028874_155028985_R

Intron Information:

Intron Rank:
141066
Intron Class:
major
Intron Phase:
Intron Coordinates:
155028874 - 155028985
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAATGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
63.2
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
33.2
-1.9
3.3
39.9
40.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023219
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024950
154998550 - 155029170
30621