About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155042922_155043620_F

Intron Information:

Intron Rank:
123634
Intron Class:
major
Intron Phase:
Intron Coordinates:
155042922 - 155043620
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCCTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.6
0.82
0.7
85.7
27.6
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
46.6
-0.1
1.8
62.98
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016675
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034410
155042714 - 155045267
2554