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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155048035_155048437_R

Intron Information:

Intron Rank:
142734
Intron Class:
major
Intron Phase:
Intron Coordinates:
155048035 - 155048437
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
87.2
27.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.78
0.8
81.5
29
Minor 5ss
40.4
-1.1
2.8
54.5
42.7
Minor BPS
76.4
0.83
1.6
88.12
28.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021901
155046215 - 155049376
3162