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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155048035_155049134_R

Intron Information:

Intron Rank:
142736
Intron Class:
major
Intron Phase:
Intron Coordinates:
155048035 - 155049134
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.78
0.8
81.5
29
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
76.4
0.83
1.6
88.12
28.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043224
155046215 - 155049192
2978