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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155048607_155049134_R

Intron Information:

Intron Rank:
142735
Intron Class:
major
Intron Phase:
Intron Coordinates:
155048607 - 155049134
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTCTCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
79
0.65
0.9
72.3
36.5
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
68.6
0.67
1.2
79.75
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021901
155046215 - 155049376
3162