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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155061055_155074138_F

Intron Information:

Intron Rank:
138350
Intron Class:
major
Intron Phase:
Intron Coordinates:
155061055 - 155074138
Intron Length:
13084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
AGGCCCTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
59
0.22
1
66.7
30
Major PPT
73.7
0.53
0.9
68.8
37.1
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
47.2
-0.3
1.8
49.27
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035218
155060773 - 155074883
14111