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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155061055_155076597_F

Intron Information:

Intron Rank:
138349
Intron Class:
major
Intron Phase:
Intron Coordinates:
155061055 - 155076597
Intron Length:
15543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
87.1
0.83
0.8
82.4
34
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029395
155060773 - 155076743
15971