Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15508259_15509610_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15508259 - 15509610

Intron Length:

1352

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGT|GCAAAGCAA

5'SS Class:

weak_major

3'SS Sequence:

GAATAGCACTAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

TGTAATGTAAAA

Flanking Amino Acid:

FEENMDLECDVLIQRISFDR

Intron Amino Acid Position:

1003

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.6

0.02

1.4

47.3

40.9

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

46.9

-0.1

1.1

42.6

41.9

Minor 5ss

21.1

-3.3

29.5

43.4

Minor BPS

44.3

-0.4

2.2

59.22

40.1

Associated Gene:

Gene:

SVIL

Ensembl Gene ID:

ENSAPLG00000006418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006743

15471168 - 15527698

56531