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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155087705_155106766_R

Intron Information:

Intron Rank:
130593
Intron Class:
major
Intron Phase:
Intron Coordinates:
155087705 - 155106766
Intron Length:
19062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACCCAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TGTTTTCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
59.7
46.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
44.6
-0.6
3
56.7
47.5
Minor BPS
48.2
-0.1
1.8
62.91
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017502
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032462
155087525 - 155107614
20090