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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1550997_1673150_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1550997 - 1673150
Intron Length:
122154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AAGATTTTAATT
Flanking Amino Acid:
NLTGDVCAVMRVHAFLEQWG
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.8
0.65
0.9
72.5
37.8
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
59.8
0.39
1.2
67.51
37.7

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046273
1510299 - 1709755
199457