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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155104983_155114458_F

Intron Information:

Intron Rank:
125717
Intron Class:
major
Intron Phase:
Intron Coordinates:
155104983 - 155114458
Intron Length:
9476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
ATTTCTGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
51.6
0.13
2.2
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017707
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032134
155103799 - 155115290
11492