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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155104983_155116428_F

Intron Information:

Intron Rank:
125719
Intron Class:
major
Intron Phase:
Intron Coordinates:
155104983 - 155116428
Intron Length:
11446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
GGTCACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATAAGGGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.5
0.53
1
65.5
40.7
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
34.1
-1.2
2.5
48.86
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017707
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045980
155103799 - 155117040
13242