About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15512901_15514119_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15512901 - 15514119
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGG
5'SS Class:
major
3'SS Sequence:
TCTGTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GCATCTTTAAAA
Flanking Amino Acid:
TVVKSTVQPISLQASAHQKI
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
51.7
45.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
86.6
0.82
0.7
84.6
30.3
Minor 5ss
27.6
-2.6
3.6
38.4
46.6
Minor BPS
64.7
0.46
1.4
66.24
39.9

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531