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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15515597_15517370_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15515597 - 15517370
Intron Length:
1774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TACAAGCTATGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTCACTTACTA
Flanking Amino Acid:
ITSAERKETDSLIHYIHYIQ
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
71.6
0.54
1
72
33.1
Major PPT
45.2
-0.2
1.7
47.9
44.2
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
59.1
0.28
1.8
73.87
37.8

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531