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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15517542_15517871_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15517542 - 15517871
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TGTGGTTTAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TGTGGTTTAAAA
Flanking Amino Acid:
ETANANKKTDLESRFEMSTS
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.2
60
39.3
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
59.7
0.22
1.2
60.3
44.1
Minor 5ss
34.5
-1.8
3.5
52.3
45
Minor BPS
50.4
0.01
2
64.9
41.7

Associated Gene:

Gene:
SVIL
Ensembl Gene ID:
ENSAPLG00000006418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006743
15471168 - 15527698
56531