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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155197419_155197873_R

Intron Information:

Intron Rank:
132424
Intron Class:
major
Intron Phase:
Intron Coordinates:
155197419 - 155197873
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAC
5'SS Class:
major
3'SS Sequence:
CTGTTTACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGCTGTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
35.6
Major BPS
76.2
0.65
1
67
39.8
Major PPT
75
0.56
0.9
69.4
35.6
Minor 5ss
36.3
-1.6
3.4
49.9
46.6
Minor BPS
49.5
-0
2
63.17
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018517
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037412
155197248 - 155199319
2072