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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155197925_155198664_R

Intron Information:

Intron Rank:
132427
Intron Class:
major
Intron Phase:
Intron Coordinates:
155197925 - 155198664
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTGAT
5'SS Class:
major
3'SS Sequence:
TATCTGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCTTTGTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
70.2
35.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.2
0.66
0.9
76.7
37
Minor 5ss
27.7
-2.6
3.4
35.9
43.5
Minor BPS
45.8
-0.3
2.3
57.43
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018517
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043635
155196127 - 155199319
3193