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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155227936_155232859_R

Intron Information:

Intron Rank:
137081
Intron Class:
major
Intron Phase:
Intron Coordinates:
155227936 - 155232859
Intron Length:
4924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGGGACTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
83.3
0.75
0.8
76.8
32
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
57.6
0.22
1.6
63.89
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032101
155227312 - 155235725
8414