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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155234689_155243904_R

Intron Information:

Intron Rank:
137085
Intron Class:
major
Intron Phase:
Intron Coordinates:
155234689 - 155243904
Intron Length:
9216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
ACTCCATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
ACTCCATTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
76.6
0.6
0.9
69
35.4
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
51
0.03
1.9
64.68
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034963
155233961 - 155244327
10367